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Load dataset
Current Data
Load data from local folder
Advanced: Select an .RData file that you downloaded from SUSHI's result folderTesting
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This app is designed to directly load results produced with sushi http://fgcz-sushi.uzh.ch . Alternatively you can load Sushi .RData results that you saved to your disk.
Summary of loaded data
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No input data detected. Please, load your results to see the configuration options
Select genes for the analysis
Selection Summary
Select, remove or edit samples
Edit the sample names and experimental factors. Samples will be grouped according to experimental factors
Deselect samples to remove them from the visualizations.
Reorder samples
Reorder samples according to experimental factors
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Settings
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MDS (multi-dimensional scaling) shows the dissimilarities of the samples
Our visualization uses a two-dimensional mapping
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PCA (Principal Component Analysis) shows similar to MDS sample dissimilarities in a low-dimensional space
See the intuitive explanation:
Intuitive explanation for PCA
PCA is plotted based on all genes and on only on the most highly variable genes